B2 - Deciphering the inherent molecular features underlying catalytically active DNA sequences

Project-related Publications

[P1] J. Borggräfe, J. Victor, H. Rosenbach, A. Viegas, C.G.W. Gertzen, C. Wuebben, H. Kovacs, M. Gopalswamy, D. Riesner, G. Steger, O. Schiemann, H. Gohlke, I. Span, M. Etzkorn*
“Time-resolved structural analysis of an RNA-cleaving DNA catalyst”
Nature 2022, 601, 144–149. DOI: 10.1038/s41586-021-04225-4.

[P2] A. Dubey, N. Stoyanov, T. Viennet, S. Chhabra, S. Elter, J. Borggräfe, A. Viegas, R.P. Nowak, N. Burdzhiev, O. Petrov, E.S. Fischer, M. Etzkorn*, V. Gelev*, H. Arthanari*
“Local deuteration enables NMR observation of methyl groups in proteins from eukaryotic and cell‐free expression systems”
Angew. Chem. Int. Ed. 2021, 60, 13783–13787. DOI: 10.1002/anie.202016070.

[P3] H. Rosenbach, J. Borggräfe, J. Victor, C. Wuebben, O. Schiemann, W. Hoyer, G. Steger, M. Etzkorn*, I. Span*
“Influence of monovalent metal ions on metal binding and catalytic activity of the 10-23 DNAzyme”
Biol. Chem. 2021, 402, 99–111. DOI: 10.1515/hsz-2020-0207.

[P4] A. Viegas, D.M. Yin, J. Borggräfe, T. Viennet, M. Falke, A. Schmitz*, M. Famulok, M. Etzkorn*
“Molecular Architecture of a Network of Potential Intracellular EGFR Modulators: ARNO, CaM, Phospholipids, and the Juxtamembrane Segment”
Structure 2020, 28, 54–62. DOI: 10.1016/j.str.2019.11.001.

[P5] H. Rosenbach, J. Victor, J. Borggräfe, R. Biehl, G. Steger, M. Etzkorn, I. Span*
“Expanding crystallization tools for nucleic acid complexes using U1A protein variants”
J. Struct. Biol. 2020, 210, 107480. DOI: 10.1016/j.jsb.2020.107480.

[P6] H. Rosenbach, J. Victor, M. Etzkorn, G. Steger, D. Riesner, I. Span*
“Molecular Features and Metal Ions That Influence 10-23 DNAzyme Activity“
Molecules 2020, 25, 3100. DOI: 10.3390/molecules25133100.

[P7] T. Viennet, A. Viegas, A. Kuepper, S. Arens, V. Gelev, O. Petrov, T.N. Grossmann, H. Heise, M. Etzkorn*
“Selective Protein Hyperpolarization in Cell Lysates Using Targeted Dynamic Nuclear Polarization”
Angew. Chem. Int. Ed. 2016, 55, 10746–10750. DOI: 10.1002/anie.201603205.

[P8] A. Viegas, T. Viennet, T.-Y. Yu, F. Schumann, W. Bermel, G. Wagner, M. Etzkorn*
“UTOPIA NMR: activating unexploited magnetization using interleaved low-gamma detection”
J. Biomol. NMR 2016, 64, 9–15. DOI: 10.1007/s10858-015-0008-7.

[P9] T. Yi, B. Zhai, Y. Yu, Y. Kiyotsugu, T. Raschle, M. Etzkorn, H.-C. Seo, M. Nagiec, R.E. Luna, E.L. Reinherz, J. Blenis, S.P. Gygi*, G. Wagner*
“Quantitative phosphoproteomic analysis reveals system-wide signaling pathways downstream of SDF-1/CXCR4 in breast cancer stem cells”
Proc. Natl. Acad. Sci. USA 2014, 111, E2182–E2190. DOI: 10.1073/pnas.1404943111.

[P10] F. Hagn, M. Etzkorn, T. Raschle, G. Wagner*
“Optimized phospholipid bilayer nanodiscs facilitate high-resolution structure determination of membrane proteins”
J. Am. Chem. Soc. 2013, 135, 1919–1925. DOI: 10.1021/ja310901f.